logo
Advanced

  • Manihot esculenta
  • Manihot esculenta v6
    • Scientific Name
    Manihot esculenta
    Common Names
    manioc, tapioca, yuca; cassava; Manihot utilissima
    Bioproject
    PRJNA234389
    Biosample
    SAMN04116956
    Accession No.
    GCA_001659605.1
    RefSeq Accession No.
    GCF_001659605.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    DOE-Joint Genome Institute
    Released Date
    2025-05-21
    NCBI Released Date
    2016-06-10
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_001659605.2 GCF_001659605.2 different M.esculenta_v8 Draft genome in scaffold level 2021-08-13 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_001659605.1 GCF_001659605.1 different Manihot esculenta v6 Draft genome in scaffold level 2016-06-10 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 582,117,524
    Chromosomes, organellas and plasmids sequnece No. 18
    Genome sequence No. 2,019
    GC content 36
    Scaffold sequence No. 2,019
    Scaffold L50 10
    Scaffold N50 (bp) 28,119,335
    Scaffold N75 (bp) 26,335,333
    Scaffold N90 (bp) 374,367
    Contig sequence No. 39,915
    Contig L50 5,394
    Contig N50 (bp) 26,694
    Unique components No. 39,915
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 37,896
    Ns gap sequence region length (bp) 86,649,479
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 33044 0 0 0 0 0 33044

    Statistics of Genome Assembly

    Genome size (bp) 582,278,977
    Chromosomes, organellas and plasmids sequnece No. 19
    Genome sequence No. 2,020
    GC content 36
    Scaffold sequence No. 2,020
    Scaffold L50 10
    Scaffold N50 (bp) 28,119,335
    Scaffold N75 (bp) 26,335,333
    Scaffold N90 (bp) 366,680
    Contig sequence No. 39,916
    Contig L50 5,391
    Contig N50 (bp) 26,702
    Unique components No. 39,916
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 37,896
    Ns gap sequence region length (bp) 86,649,479
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 28299 818 71609 1218 3 31954