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  • Manihot esculenta
  • M.esculenta_v8
    • Scientific Name
    Manihot esculenta
    Common Names
    manioc, tapioca, yuca; cassava; Manihot utilissima
    Bioproject
    PRJNA234389
    Biosample
    SAMN04116956
    Accession No.
    GCA_001659605.2
    RefSeq Accession No.
    GCF_001659605.2
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    DOE-Joint Genome Institute
    Released Date
    2023-12-15
    NCBI Released Date
    2021-08-13
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_001659605.2 GCF_001659605.2 different M.esculenta_v8 Draft genome in scaffold level 2021-08-13 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_001659605.1 GCF_001659605.1 different Manihot esculenta v6 Draft genome in scaffold level 2016-06-10 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 639,586,700
    Chromosomes, organellas and plasmids sequnece No. 18
    Genome sequence No. 84
    Scaffold sequence No. 102
    Scaffold L50 10
    Scaffold N50 (bp) 29,151,420
    Scaffold N75 (bp) 18,892,609
    Scaffold N90 (bp) 11,555,880
    Contig sequence No. 756
    Contig L50 56
    Contig N50 (bp) 3,258,867
    Unique components No. 756
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 654
    Ns gap sequence region length (bp) 2,472,345
    Gaps No. between scaffolds 18
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 32805 0 0 0 0 0 32805

    Statistics of Genome Assembly

    Genome size (bp) 640,430,993
    Chromosomes, organellas and plasmids sequnece No. 20
    Genome sequence No. 86
    GC content 37.5
    Scaffold sequence No. 104
    Scaffold L50 10
    Scaffold N50 (bp) 29,151,420
    Scaffold N75 (bp) 18,892,609
    Scaffold N90 (bp) 11,555,880
    Contig sequence No. 758
    Contig L50 56
    Contig N50 (bp) 3,258,867
    Unique components No. 758
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 654
    Ns gap sequence region length (bp) 2,472,345
    Gaps No. between scaffolds 18
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 29735 873 6131880 1208 3 34312