- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJNA13421
- Biosample
- SAMN02953785
- Accession No.
- GCA_000003025.5
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- The Swine Genome Sequencing Consortium (SGSC)
- Released Date
- 2025-05-21
- NCBI Released Date
- 2016-12-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000003025.7 | - | - | T2T-Sscrofa | Draft genome in contig level | 2025-12-01 | |
| GCA_000003025.6 | GCF_000003025.6 | different | Sscrofa11.1 | Draft genome in scaffold level | 2017-02-07 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000003025.5 | - | - | Sscrofa11 | Draft genome in scaffold level | 2016-12-06 | DNA GFF |
| GCA_000003025.4 | GCF_000003025.5 | different | Sscrofa10.2 | Draft genome in scaffold level | 2011-09-07 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,456,768,445 |
| Chromosomes, organellas and plasmids sequnece No. | 19 |
| Genome sequence No. | 602 |
| Scaffold sequence No. | 626 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 88,231,837 |
| Scaffold N75 (bp) | 52,130,888 |
| Scaffold N90 (bp) | 24,692,315 |
| Contig sequence No. | 705 |
| Contig L50 | 15 |
| Contig N50 (bp) | 48,231,277 |
| Unique components No. | 705 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 79 |
| Ns gap sequence region length (bp) | 1,869,354 |
| Gaps No. between scaffolds | 24 |