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  • Sus scrofa
  • Sscrofa11.1
    • Scientific Name
    Sus scrofa
    Common Names
    pigs, swine, wild boar; pig;
    Bioproject
    PRJNA13421
    Biosample
    SAMN02953785
    Accession No.
    GCA_000003025.6
    RefSeq Accession No.
    GCF_000003025.6
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    The Swine Genome Sequencing Consortium (SGSC)
    Released Date
    2025-02-23
    NCBI Released Date
    2017-02-07
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000003025.7 - - T2T-Sscrofa Draft genome in contig level 2025-12-01
    GCA_000003025.6 GCF_000003025.6 different Sscrofa11.1 Draft genome in scaffold level 2017-02-07 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000003025.5 - - Sscrofa11 Draft genome in scaffold level 2016-12-06 DNA GFF
    GCA_000003025.4 GCF_000003025.5 different Sscrofa10.2 Draft genome in scaffold level 2011-09-07 DNA GFF
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 2,501,895,775
    Chromosomes, organellas and plasmids sequnece No. 20
    Genome sequence No. 612
    GC content 42
    Scaffold sequence No. 705
    Scaffold L50 9
    Scaffold N50 (bp) 88,231,837
    Scaffold N75 (bp) 52,130,888
    Scaffold N90 (bp) 23,010,887
    Contig sequence No. 1,117
    Contig L50 15
    Contig N50 (bp) 48,231,277
    Unique components No. 1,307
    No. of regions with alternate loci or patches 2
    Ns gap sequence No. (bp) 413
    Ns gap sequence region length (bp) 29,864,641
    Gaps No. between scaffolds 93

    Statistics of Genome Assembly

    Genome size (bp) 2,501,912,388
    Chromosomes, organellas and plasmids sequnece No. 21
    Genome sequence No. 613
    GC content 42
    Scaffold sequence No. 706
    Scaffold L50 9
    Scaffold N50 (bp) 88,231,837
    Scaffold N75 (bp) 52,130,888
    Scaffold N90 (bp) 23,010,887
    Contig sequence No. 1,118
    Contig L50 15
    Contig N50 (bp) 48,231,277
    Unique components No. 1,308
    No. of regions with alternate loci or patches 2
    Ns gap sequence No. (bp) 413
    Ns gap sequence region length (bp) 29,864,641
    Gaps No. between scaffolds 93
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 20674 532 45952 3084 142 30388