- Scientific Name
- Populus trichocarpa
- Common Names
- western balsam poplar; black cottonwood; Populus balsamifera subsp. trichocarpa
- Bioproject
- PRJNA10772
- Biosample
- SAMN02953657
- Accession No.
- GCA_000002775.2
- RefSeq Accession No.
- GCF_000002775.3
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- US DOE Joint Genome Institute (JGI
- Released Date
- 2025-05-21
- NCBI Released Date
- 2013-10-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000002775.4 | GCF_000002775.5 | different | P.trichocarpa_v4.1 | Draft genome in scaffold level | 2022-10-20 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000002775.3 | GCF_000002775.4 | different | Pop_tri_v3 | Draft genome in scaffold level | 2018-01-24 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000002775.2 | GCF_000002775.3 | identical | Poptr2_0 | Draft genome in scaffold level | 2013-10-18 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 417,286,671 |
| Chromosomes, organellas and plasmids sequnece No. | 20 |
| Genome sequence No. | 2,514 |
| GC content | 33.5 |
| Scaffold sequence No. | 2,514 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 18,835,763 |
| Scaffold N75 (bp) | 14,966,190 |
| Scaffold N90 (bp) | 12,942,059 |
| Contig sequence No. | 13,561 |
| Contig L50 | 448 |
| Contig N50 (bp) | 242,226 |
| Unique components No. | 13,561 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 11,047 |
| Ns gap sequence region length (bp) | 13,386,693 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 41427 | 0 | 0 | 0 | 0 | 0 | 41427 |
Statistics of Genome Assembly
| Genome size (bp) | 417,286,671 |
| Chromosomes, organellas and plasmids sequnece No. | 20 |
| Genome sequence No. | 2,514 |
| GC content | 33.5 |
| Scaffold sequence No. | 2,514 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 18,835,763 |
| Scaffold N75 (bp) | 14,966,190 |
| Scaffold N90 (bp) | 12,942,059 |
| Contig sequence No. | 13,561 |
| Contig L50 | 448 |
| Contig N50 (bp) | 242,226 |
| Unique components No. | 13,561 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 11,047 |
| Ns gap sequence region length (bp) | 13,386,693 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 41427 | 0 | 0 | asse0 | 0 | 0 | 41427 |