logo
Advanced

  • Populus trichocarpa
  • P.trichocarpa_v4.1
    • Scientific Name
    Populus trichocarpa
    Common Names
    western balsam poplar; black cottonwood; Populus balsamifera subsp. trichocarpa
    Bioproject
    PRJNA10772
    Biosample
    SAMN02953657
    Accession No.
    GCA_000002775.4
    RefSeq Accession No.
    GCF_000002775.5
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    US DOE Joint Genome Institute (JGI
    Released Date
    2025-02-23
    NCBI Released Date
    2022-10-20
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000002775.4 GCF_000002775.5 different P.trichocarpa_v4.1 Draft genome in scaffold level 2022-10-20 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000002775.3 GCF_000002775.4 different Pop_tri_v3 Draft genome in scaffold level 2018-01-24 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000002775.2 GCF_000002775.3 identical Poptr2_0 Draft genome in scaffold level 2013-10-18 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 392,162,179
    Chromosomes, organellas and plasmids sequnece No. 19
    Genome sequence No. 46
    GC content 34
    Scaffold sequence No. 105
    Scaffold L50 13
    Scaffold N50 (bp) 13,159,747
    Scaffold N75 (bp) 6,689,832
    Scaffold N90 (bp) 3,555,055
    Contig sequence No. 105
    Contig L50 13
    Contig N50 (bp) 13,159,747
    Unique components No. 105
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 0
    Ns gap sequence region length (bp) 590,000
    Gaps No. between scaffolds 59
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 34699 0 0 0 0 0 34699

    Statistics of Genome Assembly

    Genome size (bp) 392,319,212
    Chromosomes, organellas and plasmids sequnece No. 20
    Genome sequence No. 47
    GC content 34
    Scaffold sequence No. 106
    Scaffold L50 13
    Scaffold N50 (bp) 13,159,747
    Scaffold N75 (bp) 6,689,832
    Scaffold N90 (bp) 3,555,055
    Contig sequence No. 106
    Contig L50 13
    Contig N50 (bp) 13,159,747
    Unique components No. 106
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 0
    Ns gap sequence region length (bp) 590,000
    Gaps No. between scaffolds 59
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 29617 629 2352768 1372 0 34621