- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJDB20528
- Biosample
- SAMD00896523
- Accession No.
- GCA_055397395.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Kazusa DNA Research Institute
- Released Date
- 2026-04-15
- NCBI Released Date
- 2025-11-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_055397395.1 | - | - | UD21_r1.0 | Draft genome in scaffold level | 2025-11-28 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 381,398,377 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 12 |
| GC content | 43.5 |
| Scaffold sequence No. | 12 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 30,396,699 |
| Scaffold N75 (bp) | 28,576,875 |
| Scaffold N90 (bp) | 25,601,763 |
| Contig sequence No. | 39 |
| Contig L50 | 6 |
| Contig N50 (bp) | 30,030,604 |
| Unique components No. | 12 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 27 |
| Ns gap sequence region length (bp) | 2,700 |
| Gaps No. between scaffolds | 0 |