- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA13139
- Biosample
- SAMN02953597
- Accession No.
- GCA_000149285.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Beijing Genomics Institute
- Released Date
- 2023-10-25
- NCBI Released Date
- 2005-01-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 391,147,533 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 7,670 |
| GC content | 44 |
| Scaffold sequence No. | 7,777 |
| Scaffold L50 | 14 |
| Scaffold N50 (bp) | 10,615,099 |
| Scaffold N75 (bp) | 3,249,876 |
| Scaffold N90 (bp) | 116,495 |
| Contig sequence No. | 35,047 |
| Contig L50 | 5,249 |
| Contig N50 (bp) | 21,233 |
| Unique components No. | 35,047 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 27,270 |
| Ns gap sequence region length (bp) | 16,921,250 |
| Gaps No. between scaffolds | 107 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 35394 | 629 | 61 | 948 | 0 | 0 | 37032 |