- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJDA39809
- Biosample
- SAMD00009497
- Accession No.
- GCA_000164945.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- QTL Genomics Research Center, National Institute of Agrobiological Sciences
- Released Date
- 2023-11-07
- NCBI Released Date
- 2010-04-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000164945.1 | - | - | OrySat_Aug2009 | Draft genome in scaffold level | 2010-04-23 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 382,150,945 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 12 |
| Scaffold sequence No. | 12 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 30,828,668 |
| Scaffold N75 (bp) | 28,530,027 |
| Scaffold N90 (bp) | 23,843,360 |
| Contig sequence No. | 654,543 |
| Contig L50 | 23,951 |
| Contig N50 (bp) | 3,191 |
| Unique components No. | 654,543 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 654,548 |
| Ns gap sequence region length (bp) | 75,972,973 |
| Gaps No. between scaffolds | 0 |