- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA13141
- Accession No.
- GCA_000005425.2
- RefSeq Accession No.
- GCF_000005425.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- International Rice Genome Sequencing Project
- Released Date
- 2025-01-11
- NCBI Released Date
- 2009-08-07
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000005425.2 | GCF_000005425.2 | different | Build 4.0 | Draft genome in scaffold level | 2009-08-07 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 382,150,945 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 12 |
| GC content | 43.5 |
| Scaffold sequence No. | 12 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 30,828,668 |
| Scaffold N75 (bp) | 28,530,027 |
| Scaffold N90 (bp) | 23,843,360 |
| Contig sequence No. | 275 |
| Contig L50 | 18 |
| Contig N50 (bp) | 7,131,322 |
| Unique components No. | 3,455 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 263 |
| Ns gap sequence region length (bp) | 10,060,004 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 28392 | 720 | 0 | 0 | 26 | 1156 | 30294 |