- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJDB1747
- Biosample
- SAMD00000397
- Accession No.
- GCA_001433935.1
- RefSeq Accession No.
- GCF_001433935.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- National Institute of Agrobiological Sciences
- Released Date
- 2025-01-12
- NCBI Released Date
- 2015-10-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001433935.1 | GCF_001433935.1 | different | IRGSP-1.0 | Draft genome in scaffold level | 2015-10-10 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 373,795,655 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 55 |
| GC content | 43.5 |
| Scaffold sequence No. | 55 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 29,958,434 |
| Scaffold N75 (bp) | 28,443,022 |
| Scaffold N90 (bp) | 23,207,287 |
| Contig sequence No. | 302 |
| Contig L50 | 17 |
| Contig N50 (bp) | 7,711,345 |
| Unique components No. | 55 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 256 |
| Ns gap sequence region length (bp) | 117,485 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 374,422,835 |
| Chromosomes, organellas and plasmids sequnece No. | 15 |
| Genome sequence No. | 58 |
| GC content | 43.5 |
| Scaffold sequence No. | 58 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 29,958,434 |
| Scaffold N75 (bp) | 28,443,022 |
| Scaffold N90 (bp) | 23,207,287 |
| Contig sequence No. | 305 |
| Contig L50 | 17 |
| Contig N50 (bp) | 7,711,345 |
| Unique components No. | 58 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 256 |
| Ns gap sequence region length (bp) | 117,485 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 28738 | 672 | 200 | asse4008 | 1605 | 0 | 35223 |