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  • Malus domestica
  • ASM211411v1
    • Scientific Name
    Malus domestica
    Common Names
    apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
    Bioproject
    PRJNA339703
    Biosample
    SAMN05603590
    Accession No.
    GCA_002114115.1
    RefSeq Accession No.
    GCF_002114115.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    IRHS
    Released Date
    2023-12-11
    NCBI Released Date
    2017-05-03
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_002114115.1 GCF_002114115.1 different ASM211411v1 Draft genome in scaffold level 2017-05-03 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 702,961,352
    Chromosomes, organellas and plasmids sequnece No. 17
    Genome sequence No. 806
    Scaffold sequence No. 806
    Scaffold L50 9
    Scaffold N50 (bp) 37,631,755
    Scaffold N75 (bp) 33,134,071
    Scaffold N90 (bp) 31,666,303
    Contig sequence No. 7,496
    Contig L50 329
    Contig N50 (bp) 588,895
    Unique components No. 806
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 6,690
    Ns gap sequence region length (bp) 77,686,034
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 703,358,299
    Chromosomes, organellas and plasmids sequnece No. 18
    Genome sequence No. 807
    GC content 38
    Scaffold sequence No. 807
    Scaffold L50 9
    Scaffold N50 (bp) 37,631,755
    Scaffold N75 (bp) 33,134,071
    Scaffold N90 (bp) 31,666,303
    Contig sequence No. 7,497
    Contig L50 329
    Contig N50 (bp) 588,895
    Unique components No. 807
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 6,690
    Ns gap sequence region length (bp) 77,686,034
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 35929 597 2754864 3746 1 45412