- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA427870
- Biosample
- SAMN08275267
- Accession No.
- GCA_003865235.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Chinese Academy of Agricultural Sciences
- Released Date
- 2023-11-15
- NCBI Released Date
- 2018-12-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_003865235.1 | - | - | ASM386523v1 | Draft genome in scaffold level | 2018-12-06 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 379,625,823 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 115 |
| Scaffold sequence No. | 115 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 29,958,022 |
| Scaffold N75 (bp) | 27,843,053 |
| Scaffold N90 (bp) | 23,519,173 |
| Contig sequence No. | 133 |
| Contig L50 | 8 |
| Contig N50 (bp) | 16,973,866 |
| Unique components No. | 115 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 18 |
| Ns gap sequence region length (bp) | 1,800 |
| Gaps No. between scaffolds | 0 |