- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA13141
- Accession No.
- GCA_004295705.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- National Institute of Agrobiological Sciences, Rice Genome Research Program
- Released Date
- 2025-02-23
- NCBI Released Date
- 2004-11-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 43,342,410 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 1 |
| GC content | 43.5 |
| Scaffold sequence No. | 1 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 43,342,410 |
| Scaffold N75 (bp) | 43,342,410 |
| Scaffold N90 (bp) | 43,342,410 |
| Contig sequence No. | 12 |
| Contig L50 | 2 |
| Contig N50 (bp) | 10,050,213 |
| Unique components No. | 397 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 11 |
| Ns gap sequence region length (bp) | 1,100 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 7192 | 0 | 0 | 0 | 0 | 4973 | 12165 |