- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA424001
- Biosample
- SAMN08217222
- Accession No.
- GCA_009830595.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- University of Arizona
- Released Date
- 2025-02-23
- NCBI Released Date
- 2020-01-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_009830595.1 | - | - | AzucenaRS1 | Draft genome in scaffold level | 2020-01-06 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 381,570,127 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 37 |
| GC content | 43.5 |
| Scaffold sequence No. | 53 |
| Scaffold L50 | 7 |
| Scaffold N50 (bp) | 22,940,949 |
| Scaffold N75 (bp) | 15,081,791 |
| Scaffold N90 (bp) | 8,726,873 |
| Contig sequence No. | 53 |
| Contig L50 | 7 |
| Contig N50 (bp) | 22,940,949 |
| Unique components No. | 53 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 1,600 |
| Gaps No. between scaffolds | 16 |