- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJNA448171
- Biosample
- SAMN08824567
- Accession No.
- GCA_009797565.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- DOE Joint Genome Institute
- Released Date
- 2023-11-16
- NCBI Released Date
- 2020-02-25
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 381,570,803 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 33 |
| Scaffold sequence No. | 428 |
| Scaffold L50 | 70 |
| Scaffold N50 (bp) | 1,515,820 |
| Scaffold N75 (bp) | 892,627 |
| Scaffold N90 (bp) | 425,286 |
| Contig sequence No. | 476 |
| Contig L50 | 75 |
| Contig N50 (bp) | 1,399,679 |
| Unique components No. | 476 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 48 |
| Ns gap sequence region length (bp) | 4,001,184 |
| Gaps No. between scaffolds | 395 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 35533 | 0 | 0 | 0 | 0 | 0 | 35533 |