HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC01000091

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Mouse
Organ:
AGM (aorta-gonad-mesonephros)
FL (fetal liver)
BM(bone marrow)
Cell Number:
73878
Gene Number:
27285
Genome Reference:
mm10
Data Normalization:
SCT
Sequencing Platform:
Integrated data
Cell Sorting Strategies:
Integrated data

Publication

CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development.

Lummertz da Rocha E, Kubaczka C, Sugden WW, Najia MA, Jing R, Markel A, LeBlanc ZC, Dos Santos Peixoto R, Falchetti M, Collins JJ, North TE, Daley GQ.
Volume:24 Issue:4 Nature cell biology | 2022-04-12 | [35414020]

Single-cell omics identifies inflammatory signaling as a trans-differentiation trigger in mouse embryos.

Zhang Y, Kang Z, Liu M, Wang L, Liu F.
Volume:59 Issue:8 Developmental cell | 2024-03-19 | [38508181]

Identification of HSC/MPP expansion units in fetal liver by single-cell spatiotemporal transcriptomics.

Gao S, Shi Q, Zhang Y, Liang G, Kang Z, Huang B, Ma D, Wang L, Jiao J, Fang X, Xu CR, Liu L, Xu X, Göttgens B, Li C, Liu F.
Volume: Issue: Cell research | 2021-08-02 | [34341490]

Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization.

Baccin C, Al-Sabah J, Velten L, Helbling PM, Grünschläger F, Hernández-Malmierca P, Nombela-Arrieta C, Steinmetz LM, Trumpp A, Haas S.
Volume:22 Issue:1 Nature cell biology | 2019-12-23 | [31871321]

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris.

Tabula Muris Consortium, Overall coordination, Logistical coordination, Organ collection and processing, Library preparation and sequencing, Computational data analysis, Cell type annotation, Writing group, Supplemental text writing group, Principal investigators.
Volume:562 Issue:7727 Nature | 2018-10-03 | [30283141]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

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Gene Expression (Dot plot)

Cell Number Across Stages