Difference between revisions of "Main Page"

Latest revision as of 10:38, 18 September 2021

Welcome to LncRNAWiki 1.0

106,063 human long non-coding RNAs inside

Introduction

LncRNAWiki is a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs), viz., a community-curated lncRNA knowledgebase. Unlike conventional biological databases based on expert curation, lncRNAWiki harnesses collective intelligence to collect, edit and annotate information about lncRNAs, quantifies users' contributions in each annotated lncRNA and provides explicit authorship to encourage more participation from the whole scientific community.

LncRNAWiki, an important component of LncBook, provides community annotations of human lncRNAs

Featured lncRNAs

Top 10 lncRNA-associated diseases

Diseases and their associated lncRNAs' counts are listed below.

Hepatocellular cancer: 361

Colorectal cancer: 305

Lung cancer: 296

Breast cancer: 282

Oral squamous cell cancer: 234

Gastric cancer: 233

Prostate cancer: 213

B acute lymphoblastic leukemia with t(1;19)(q23;p13.3): 173

Papillary thyroid cancer: 157

Obesity: 151

Extensively curated

HOTAIR

MALAT-1

H19

MEG3

NEAT1

PVT1

GAS5

CDKN2B-AS1

HOTTIP

7SK

BANCR

BTG3-AS1

CERNA2

FLICR

GUARDIN

LINC-ROR

PINCR

PLUT

LUNAR1

SRA

KCNQ1OT1

PCGEM1

XIST

BCYRN1

TUG1

UCA1

HULC

PRNCR1

TP53COR1

PANDAR

Functional mechanism

Functional mechanisms and their associated lncRNAs' counts are listed below.

How to Cite

If you use any data or information in your work, please cite the following publications.

Primary publication:

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. (2015) Nucleic Acids Research, 43:D187-92.

Related publication:

Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook. Curr Protoc Bioinformatics 2019.

Visitor Statistics

@@ Line 1: / Line 1: @@
-'''MediaWiki has been successfully installed.'''
+__NOTITLE__
+__NOTOC__
+__NOEDITSECTION__
-Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
+<!-----------------title--------------------->
+{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
+|style="width:40%; text-align:center; white-space:nowrap; color:#000"|
+<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to LncRNAWiki 1.0</div>
+<div style="padding:0em; font-size:100%">[[:Category:Transcripts|106,063]] human long non-coding RNAs inside</div>
-== Getting started ==
+|style="width:15%;|
-* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
+*[[:Category:Transcripts|Transcripts]]
-* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
+*[[:Category:Genes|Genes]]
-* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+*[[LncRNAWiki:Classification|Classification]]
+|style="width:15%;|
+*[[LncRNAWiki:Featured|Featured LncRNAs]]
+*[https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&biological_context=Disease Disease]
+*[https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism= Function]
+|style="width:15%;|
+*[[LncRNAWiki:Small_proteins|Small Proteins]]
+*[http://bigd.big.ac.cn/lgc Prediction]
+*[http://bigd.big.ac.cn/lncbook/blast BLAST]
+|style="width:15%;|
+<div style="padding:0.5em 0.5em;">[[File:News2.png|center|150px|link=https://ngdc.cncb.ac.cn/lncrnawiki/]]</div>
+|}
+<!---------------welcome Box----------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"|
+<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div>
+<div style="padding:1em 0.5em;">
+{{LncRNAWiki:Summary}}
+<div style="padding:0.2em 0.5em;text-align:center;color:#2d2d2d;"> ''LncRNAWiki, an important component of '' [http://bigd.big.ac.cn/lncbook '''LncBook'''], ''provides community annotations of human lncRNAs''</div>
+</div>
+|}
+<!--------------main part one---------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|-
+<!-----------Featured lncRNAs------------>
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[http://lncrna.big.ac.cn/index.php/LncRNAWiki:Featured Featured lncRNAs]</div>
+<div style="padding:0.5em 0.5em;">[[File:Homepage-2020.png|center|500px|link=LncRNAWiki:Featured]]</div>
+|style="padding:0px 4px;"|
+<!-----------Top 10 lncRNA-associated diseases------------>
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10  [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&biological_context=Disease lncRNA-associated diseases]</div>
+<div style="padding:0.5em 0.5em;">
+''Diseases and their associated lncRNAs' counts are listed below.''
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=hepatocellular%20cancer Hepatocellular cancer]: 361
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=colorectal%20cancer Colorectal cancer]: 305
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=lung%20cancer Lung cancer]: 296
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=breast%20cancer Breast cancer]: 282
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=oral%20squamous%20cell%20cancer Oral squamous cell cancer]: 234
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=Gastric%20cancer Gastric cancer]: 233
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=prostate%20cancer Prostate cancer]: 213
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=b%20acute%20lymphoblastic%20leukemia%20with%20t B acute lymphoblastic leukemia with t(1;19)(q23;p13.3)]: 173
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=papillary%20thyroid%20cancer Papillary thyroid cancer]: 157
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&context_detail=obesity Obesity]: 151
+</div>
+|}
+<!--------------main part two---------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|-
+<!-----------------Extensively curated---------------------->
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"|
+{|style="width:100%;"
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Extensively curated</div>
+|style="width:33%;|
+* [[NONHSAT028508|''HOTAIR'']]
+* [[ENST00000534336.1|''MALAT-1'']]
+* [[NONHSAT017465|''H19'']]
+* [[NONHSAT039745|''MEG3'']]
+* [[ENST00000501122.2|''NEAT1'']]
+* [[ENST00000513868.2|''PVT1'']]
+* [[NONHSAT007663|''GAS5'']]
+* [[Lnc-C9orf53-2:1|''CDKN2B-AS1'']]
+* [[NONHSAT119717|''HOTTIP'']]
+* [[NONHSAT113149|''7SK'']]
+|style="width:33%;|
+* [[BANCR|''BANCR'']]
+* [[BTG3-AS1|''BTG3-AS1'']]
+* [[CERNA2|''CERNA2'']]
+* [[FLICR|''FLICR'']]
+* [[GUARDIN|''GUARDIN'']]
+* [[LINC-ROR|''LINC-ROR'']]
+* [[PINCR|''PINCR'']]
+* [[PLUT|''PLUT'']]
+* [[LUNAR1|''LUNAR1'']]
+* [[Lnc-SRA1-1:1|''SRA'']]
+|style="width:34%;|
+* [[NONHSAT017524|''KCNQ1OT1'']]
+* [[NONHSAT076153|''PCGEM1'']]
+* [[NONHSAT137541|''XIST'']]
+* [[Lnc-EPCAM-1:2|''BCYRN1'']]
+* [[NONHSAT084827|''TUG1'']]
+* [[Lnc-OR10H5-1:1|''UCA1'']]
+* [[NONHSAT107640|''HULC'']]
+* [[NONHSAT129019|''PRNCR1'']]
+* [[TP53COR1|''TP53COR1'']]
+* [[Lnc-CDKN1A-1:1|''PANDAR'']]
+|}
+|style="padding:0px 4px;"|
+<!-----------------Function---------------------->
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism= Functional mechanism]</div>
+<div style="padding:0.5em 0.5em;">
+''Functional mechanisms and their associated lncRNAs' counts are listed below.''
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism=ceRNA ceRNA]:	194
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism=Transcriptional%20regulation Transcriptional regulation]:	85
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism=Epigenetic%20regulation Epigenetic regulation]:	84
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism=Post-transcriptional%20regulation Post-transcriptional regulation]:	12
+* [https://ngdc.cncb.ac.cn/lncrnawiki/browse?flag=True&functional_mechanism=Translational%20regulation Translational regulation]:	2
+</div>
+|}
+<!--------------main part three---------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+<!------------- Participating---------------->
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent; width:75%"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">How to Cite</div>
+<div style="padding:0.5em 1em;">
+If you use any data or information in your work, please cite the following publications.
+Primary publication:
+* [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92.
+Related publication:
+* [https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.82 '''Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook'''.] '' Curr Protoc Bioinformatics 2019''.
+</div>
+<!------------Visitor Statistics------------->
+|style="padding:0px 4px;"|
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Visitor Statistics</div>
+<div style="padding:0.5em 1em;text-align:center">
+<htmlet nocache="yes">earth</htmlet>
+</div>
+|}

Difference between revisions of "Main Page"

Latest revision as of 10:38, 18 September 2021

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

About

Science Wikis

Links

Tools