Overview of Mycobacterium avium
General Information
| Taxonomy ID | 1764 |
|
Type Strain |
ATCC 25291; CCUG 20992; CIP 104244; DSM 44156; NCTC 13034 |
|
Type Strain Genome |
GCF_009741445.1 |
| RefSeq Representative Genome | GCF_022175585.1 |
| Risk Group | 2 |
| Growth Type | slowly growing mycobacteria |
| Strain Number | 2271 |
Subspecies
| Subspecies Name | Taxonomy ID | Type Strain Genome | Representative Genome | Strain Number |
|---|---|---|---|---|
| M.avium subsp. paratuberculosis | 1770 | GCF_000240525.1 | 1086 | |
| M.avium subsp. silvaticum | 44282 | GCF_000504975.1 | 0 | |
| M.avium subsp. avium | 44454 | GCF_009741445.1 | GCF_022175585.1 | 977 |
Phylogeny
Phylogeny section shows epidemiological phenomena of the species. You can click on the arrow to bring up the toolbox, and color the evolutionary tree, such as sampling date, MLST, country, source, and host. In addition, you can change the appearance layout of the evolutionary tree, such as rectangular, radial, unrooted, clock, or scatter. This tool is powered by NextStrain.
Multilocus Sequence Typing (MLST)
The following diagram shows the ST relationship of all strains of this species in NTM-DB, with different colors representing different STs. The size of each circle indicates the number of strains under that ST, while the length of the line represents the distance between two STs. When the mouse hovers over a circle, detailed information about that ST will be displayed. You can click on an ST to enter the corresponding strain list and view more information.
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Pan-Genome
The Pan-Genome section provides a download channel for the pan-genome information of this species. You can download the Pan-genome, Core-genome, and Variable-genome of the species separately.
Resistome
The stacked bar chart below shows resistome information for this species. Each pillar represents a category of drugs, with the three colors respectively indicating the number of core genes, dispensable genes, and unique genes that confer resistance to the drug.
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Virulome
The Sankey diagram below displays the virulome information for this species. The left side represents the virulence factor categories, while the middle section displays the number of core genes, dispensable genes, and unique genes. The right side shows the virulence factors.