Overview of M.tokaiense: GCF_900453365.1
| Organism name | Mycobacterium tokaiense |
| GenBank assembly accession | GCF_900453365.1 |
| Representative strain | No |
| Type strain | No |
| Isolation source | |
| DST | Not tested |
| CheckM Completeness | 99.18% |
| CheckM Contamination | 1.18% |
| SSU Count | 2 |
| tRNA Count | 46 |
| Genome Size | 6,428,810 |
| Coding density | 92.87% |
| GC content | 67.84% |
| Contig N50 | 6347082 |
| Contig L50 | 1 |
Resistome
3 resistance genes found in this strain.
| Accession | Gene Name | Drug Class | Mechanism | Coverage | Identity |
|---|---|---|---|---|---|
| ARO:3000816 | mtrA | macrolide;penam | antibiotic efflux | 100.00 | 84.57 |
| ARO:3000501 | rpoB2 | rifamycin | antibiotic target alteration | 96.50 | 81.86 |
| ARO:3000245 | RbpA | rifamycin | antibiotic target protection | 96.23 | 88.86 |
Virulome
5 virulence genes found in this strain.
| Accession | Gene Name | Virulence Factor | VF full name | VF Category | Coverage | Identity |
|---|---|---|---|---|---|---|
| VFG001826 | relA | RelA | Regulation | 95.20 | 83.08 | |
| VFG001406 | ideR | IdeR | Iron-dependent regulator | Regulation | 100.00 | 80.09 |
| VFG001381 | icl | Isocitrate lyase | Others | 99.84 | 86.35 | |
| VFG001386 | phoP | PhoP | Regulation | 93.15 | 80.38 | |
| VFG001818 | mbtH | Mycobactin | Nutritional/Metabolic factor | 89.35 | 80.31 |