Single-cell chromatin accessibility and transcriptome atlas of mouse embryos
| Title | Single-cell chromatin accessibility and transcriptome atlas of mouse embryos |
|---|---|
| Description | Cis-regulatory elements regulate gene expression and lineage specification. However, the potential regulation of cis-elements on mammalian embryogenesis remains largely unexplored. To address this question, we perform single cell ATAC-seq and RNA-seq in E7.5 and E13.5 mouse embryos. |
| Organism | Mus |
| Data Type | Other Type of Genomic Data |
| Data Accessibility | Open-access |
| BioProject | PRJCA004455 |
| Release Date | 2023-06-07 |
| Submitter | JiangLab BIG (jianglab-gsa@big.ac.cn) |
| Organization | Beijing Institute of Genomics, Chinese Academy of Sciences |
| Submission Date | 2022-02-08 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX928-99-01 | peak cell fragment file | 1 | Other Type of Genomic Data | 5.18 GB | rds | 0 | |
| OMIX928-99-02 | Gene Score Matrix | 1 | Other Type of Genomic Data | 6.94 GB | rds | 0 | |
| OMIX928-99-05 | peak celltype binary matrix from call peak file | 1 | Other Type of Genomic Data | 44.51 MB | RDS | 0 | |
| OMIX928-20-06 | Gene Integration Matrix | 1 | Other Type of Genomic Data | 17.96 GB | rds | 0 | |
| OMIX928-20-07 | seurat gonad | 1 | Other Type of Genomic Data | 8.59 GB | rds | 0 | |
| OMIX928-99-09 | cis-elements and group info | 1 | Other Type of Genomic Data | 14.8 MB | xlsx | 0 | |
| OMIX928-99-10 | cis-element & gene_pair | 1 | Other Type of Genomic Data | 3.7 MB | xlsx | 0 | |
| OMIX928-99-11 | E7.5_germ_miantain_peaks | 1 | Other Type of Genomic Data | 50.4 KB | xlsx | 0 | |
| OMIX928-99-12 | gonad_cell_type_specific_cis_elements | 1 | Other Type of Genomic Data | 5.9 MB | xlsx | 0 | |
| OMIX928-20-13 | gonad_cell_type_specific_marker_genes | 1 | Other Type of Genomic Data | 374.7 KB | xlsx | 0 | |
| OMIX928-99-14 | spatial_A & P_biased_genes_and_linked_peak | 1 | Other Type of Genomic Data | 22.9 KB | xlsx | 0 | |
| OMIX928-99-15 | spatial_A & P_biased_peaks | 1 | Other Type of Genomic Data | 93.3 KB | xlsx | 0 | |
| OMIX928-99-16 | spatial_germ_layer-specific_gene_and_linked_peak | 1 | Other Type of Genomic Data | 52.5 KB | xlsx | 0 | |
| OMIX928-99-17 | spatial_germ_layer-specific_peak | 1 | Other Type of Genomic Data | 266.7 KB | xlsx | 0 | |
| OMIX928-18 | 271 cell types bw files | 1 | Other Type of Genomic Data | 7.48 GB | tar | 0 | |
| OMIX928-19 | seurat 271 clusters wholemap rna | 1 | Other Type of Genomic Data | 32.39 GB | rds | 0 | |
| OMIX928-20 | TF_41modules | 1 | Other Type of Genomic Data | 21.7 KB | xlsx | 0 | |
| OMIX928-21 | atac_organ_fragments | 23 | Other Type of Genomic Data | 31.86 GB | zip | 0 | |
| OMIX928-22 | cellranger_scATAC_Gonad-male_E13_5 | 1 | Other Type of Genomic Data | 52.09 GB | tar | 0 | |
| OMIX928-23 | cellranger_scATAC_Gonad-female_E13_5 | 1 | Other Type of Genomic Data | 55.13 GB | tar | 0 | |
| OMIX928-24 | scATAC_271_celltype_cellid | 1 | Other Type of Genomic Data | 20.44 MB | csv | 0 | |
| OMIX928-25 | scATAC_CellidBarcodeTranslate | 1 | Other Type of Genomic Data | 15.09 MB | tsv | 0 | |
| OMIX928-26 | scATAC_gonad_celltype_cellid | 1 | Other Type of Genomic Data | 5.58 MB | csv | 0 |