| Accession | PRJCA000748 | |||||||||||||||
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| Title | Pistachio genomes elucidate salt-tolerance adaptation and domestication | |||||||||||||||
| Relevance | Evolution | |||||||||||||||
| Data types |
Whole genome sequencing
Transcriptome or Gene expression Genome sequencing and assembly |
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| Organisms |
Pistacia khinjuk
Pistacia vera Pistacia atlantica subsp. mutica Pistacia terebinthus subsp. palaestina Pistacia integerrima |
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| Description | We assembled a draft pistachio reference genome, and re-sequenced 107 whole genomes from 93 domestic and 14 wild pistachio individuals, and another 35 genomes from 13 Pistacia mutica, 13 Pistacia khinjuk, 4 Pistacia integerrima, 5 Pistacia palaestina. Utilizing comparative genomic analyses, we found expanded gene families, e.g. cytochrome P450 and chitinase, which were likely involved in salt tolerance for pistachio supported by RNA-sequencing. Comparative population genomic analyses revealed pistachio was domesticated ~8000 year ago, and many genes under artificial selection, particularly genes involved in starch metabolism and seed development, which likely contributed to the successful domestication of pistachio. | |||||||||||||||
| Sample scope | Multispecies | |||||||||||||||
| Release date | 2019-02-06 | |||||||||||||||
| Publication |
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| Data provider |
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| Submitter | Dong-Dong Wu (wudongdong@mail.kiz.ac.cn) | |||||||||||||||
| Organization | Kunming Institute of Zoology, Chinese Academy of Sciences | |||||||||||||||
| Submission date | 2018-02-05 |
| Resource name | Description |
|---|---|
| BioSample (156) show | - |
| GSA (1) | - |
| CRA000978 | genome and transcriptome of pistachio |
| GWH (2) | - |
| GWHAAAP00000000 | |
| GWHAAAP00000000.1 |