- Scientific Name
- Pistacia vera
- Common Names
- pistachio;
- Bioproject
- PRJCA000748
- Biosample
- SAMC043606
- Accession No.
- GWHAAAP00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR030908
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences; Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman; Shahid Bahonar University of Kerman
- Contact
- Dong-Dong Wu(wudongdong@mail.kiz.ac.cn), Ali Esmailizadeh(aliesmaili@uk.ac.ir)
- Sequence author(s)
- Dong-Dong Wu, Ali Esmailizadeh
- Released Date
- 2019-04-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- AllPaths-LG 52488
- Sequencing & coverage
- Illumina HiSeq 2500 270.47
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Lin Zeng, et al. Whole genomes and transcriptomes reveal adaptation and domestication of pistachio. Genome Biology. 2019, 20(1):79.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAAP00000000 | - | PisVera1 | Draft genome in scaffold level | 2019-04-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHAAAP00000000.1 | - | Pistacia_version2 | Draft genome in scaffold level | 2019-05-21 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 569,153,115 |
| GC content | 35.91% |
| Scaffold sequence No. | 1,941 |
| Maximum scaffold sequence length (bp) | 3,894,457 |
| Minimum scaffold sequence length (bp) | 253 |
| Average scaffold sequence length (bp) | 293,227 |
| Scaffold N50 (bp) | 768,386 |
| Scaffold N90 (bp) | 213,380 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 29,196 | 29,196 |