- Scientific Name
- Pistacia vera
- Common Names
- pistachio;
- Bioproject
- PRJCA000748
- Biosample
- SAMC043606
- Accession No.
- GWHAAAP00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR030908
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences; Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman; Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman
- Contact
- Dong-Dong Wu(wudongdong@mail.kiz.ac.cn), Ali Esmailizadeh(aliesmaili@uk.ac.ir)
- Sequence author(s)
- Dong-Dong Wu, Ali Esmailizadeh
- Released Date
- 2019-05-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- AllPaths-LG Pistacia_version2
- Sequencing & coverage
- PacBio 373.84
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAAP00000000 | - | PisVera1 | Draft genome in scaffold level | 2019-04-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHAAAP00000000.1 | - | Pistacia_version2 | Draft genome in scaffold level | 2019-05-21 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 671,154,954 |
| GC content | 35.95% |
| Scaffold sequence No. | 1,888 |
| Maximum scaffold sequence length (bp) | 4,454,525 |
| Minimum scaffold sequence length (bp) | 253 |
| Average scaffold sequence length (bp) | 355,485 |
| Scaffold N50 (bp) | 949,204 |
| Scaffold N90 (bp) | 263,530 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 31,784 | 31,784 |