Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CircNet

General information

URL: https://awi.cuhk.edu.cn/~CircNet/php/index.php
Full name: circular RNA regulatory networks in cancers
Description: CircNet is a database for circular RNAs. In version 2, 2732 samples from 37 types of cancers were integrated into CircNet 2.0 and analyzed using several of the most reliable circRNA detection algorithms. Furthermore, target miRNAs were predicted from the full-length circRNA sequence using three reliable tools (PITA, miRanda and TargetScan). Additionally, 384 897 experimentally verified miRNA-target interactions from miRTarBase were integrated into CircNet.
Year founded: 2016
Last update: 2022
Version: v2.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: The Chinese University of Hong Kong, Shenzhen
Address: School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen 518172, China
City: Shenzhen
Province/State:
Country/Region: China
Contact name (PI/Team): Hsien-Da Huang
Contact email (PI/Helpdesk): huanghsienda@cuhk.edu.cn

Publications

Ranking

All databases:
398/6272 (93.67%)
Interaction:
64/1052 (94.011%)
Gene genome and annotation:
144/1781 (91.971%)
Health and medicine:
95/1499 (93.729%)
398
Total Rank
238
Citations
29.75
z-index

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0 Stars (1)
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Word cloud

Created with Highcharts 10.0.0CircNetcircRNAsdatabasecircRNAexpressionintegratedregulatorynovelnetworksisoformsprovidesRNAsRNAdatanewtranscriptomesequencingidentifiedprofilesregulationcircularCircularevidencesamplesFurthermoremiRNAsmiRNA-targetcircRNA-miRNA-geneCircNet:derivedrepresenttypenoncodingrecentlycatalogedEmergingindicatesexertlayerpost-transcriptionalgenestudyutilizeddatasetssystematicallyidentifyincludingknownnewlyonespipeline464RNA-seqconstructedhttp://circnet.mbc.nctu.edu.tw/followingresources:iiiiiivgenomicannotationse.g282948exonpositionsvsequencesknowledgefirstpublictissue-specificextendsdatecatalogalsothoroughanalysispreviouslyreportedgeneratesnetworkillustratesgenes©Authors2015PublishedOxfordUniversityPressbehalfNucleicAcidsResearch.CircNet2.0:

Record metadata

Created on: 2016-01-16
Curated by:
Lina Ma [2023-03-06]
Lina Ma [2022-04-26]
Mengwei Li [2016-03-31]