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  • Glycine max
  • SoyL01_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130390
    Accession No.
    GWHACEB00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106579, CRR106578, CRR106589, CRR106588, CRR106587,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 82.7
    Bionanol 173.0
    Hi-C 140.7
    Illumina Novaseq 6000 74.4
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEB00000000 - SoyL01_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 999,201,382
    GC content 34.99%
    Chromosomes sequence No. 20
    Genome sequence No. 59
    Maximum genome sequence length (bp) 59,799,138
    Minimum genome sequence length (bp) 20,843
    Average genome sequence length (bp) 16,935,617
    Genome sequence N50 (bp) 50,642,481
    Genome sequence N90 (bp) 42,628,150
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 75,781 75,781
    Others 359 359
    Total 76,140 76,140
    Annotation Details
    ChrID Protein Total
    chr1 3,503 3,503
    chr10 4,223 4,223
    chr11 3,908 3,908
    chr12 3,418 3,418
    chr13 4,416 4,416
    chr14 3,421 3,421
    chr15 3,507 3,507
    chr16 2,985 2,985
    chr17 3,797 3,797
    chr18 3,974 3,974
    chr19 3,307 3,307
    chr2 4,344 4,344
    chr20 3,186 3,186
    chr3 3,709 3,709
    chr4 3,650 3,650
    chr5 3,476 3,476
    chr6 4,565 4,565
    chr7 3,923 3,923
    chr8 4,763 4,763
    chr9 3,706 3,706
    Others 359 359
    Total 76,140 76,140