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  • Glycine max
  • SoyL02_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130391
    Accession No.
    GWHACEC00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106600, CRR106599, CRR106598, CRR106593, CRR106592,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 105.2
    Bionanol 318.5
    Hi-C 142.2
    Illumina Novaseq 6000 59.5
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEC00000000 - SoyL02_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,011,671,057
    GC content 35.06%
    Chromosomes sequence No. 20
    Genome sequence No. 53
    Maximum genome sequence length (bp) 60,108,817
    Minimum genome sequence length (bp) 9,433
    Average genome sequence length (bp) 19,088,133
    Genome sequence N50 (bp) 52,315,362
    Genome sequence N90 (bp) 43,185,276
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 78,394 78,394
    Others 307 307
    Total 78,701 78,701
    Annotation Details
    ChrID Protein Total
    chr1 3,697 3,697
    chr10 4,260 4,260
    chr11 3,897 3,897
    chr12 3,516 3,516
    chr13 4,837 4,837
    chr14 3,469 3,469
    chr15 3,693 3,693
    chr16 3,013 3,013
    chr17 3,773 3,773
    chr18 4,195 4,195
    chr19 3,768 3,768
    chr2 4,465 4,465
    chr20 3,333 3,333
    chr3 3,838 3,838
    chr4 3,662 3,662
    chr5 3,531 3,531
    chr6 4,350 4,350
    chr7 3,869 3,869
    chr8 5,259 5,259
    chr9 3,969 3,969
    Others 307 307
    Total 78,701 78,701