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  • Glycine max
  • SoyL04_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130393
    Accession No.
    GWHACEE00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106612, CRR106623, CRR106622, CRR106621, CRR106620,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 78.2
    Bionanol 145.5
    Hi-C 139.1
    Illumina Novaseq 6000 61.3
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEE00000000 - SoyL04_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,005,170,234
    GC content 35.00%
    Chromosomes sequence No. 20
    Genome sequence No. 51
    Maximum genome sequence length (bp) 59,978,071
    Minimum genome sequence length (bp) 20,000
    Average genome sequence length (bp) 19,709,220
    Genome sequence N50 (bp) 51,352,734
    Genome sequence N90 (bp) 42,495,454
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 83,562 83,562
    Others 546 546
    Total 84,108 84,108
    Annotation Details
    ChrID Protein Total
    chr1 3,662 3,662
    chr10 4,637 4,637
    chr11 4,119 4,119
    chr12 3,692 3,692
    chr13 5,609 5,609
    chr14 3,520 3,520
    chr15 4,024 4,024
    chr16 3,110 3,110
    chr17 4,142 4,142
    chr18 4,404 4,404
    chr19 3,940 3,940
    chr2 4,664 4,664
    chr20 3,811 3,811
    chr3 3,922 3,922
    chr4 3,954 3,954
    chr5 3,773 3,773
    chr6 4,781 4,781
    chr7 4,150 4,150
    chr8 5,476 5,476
    chr9 4,172 4,172
    Others 546 546
    Total 84,108 84,108