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  • Glycine max
  • SoyL05_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130394
    Accession No.
    GWHACEF00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106634, CRR106633, CRR106632, CRR106631, CRR106638,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 98.5
    Bionanol 239.4
    Hi-C 118.4
    Illumina Novaseq 6000 62.5
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEF00000000 - SoyL05_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,059,785,426
    GC content 35.09%
    Chromosomes sequence No. 20
    Genome sequence No. 106
    Maximum genome sequence length (bp) 60,154,980
    Minimum genome sequence length (bp) 20,244
    Average genome sequence length (bp) 9,997,976
    Genome sequence N50 (bp) 51,173,414
    Genome sequence N90 (bp) 41,484,693
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 79,645 79,645
    Others 1,459 1,459
    Total 81,104 81,104
    Annotation Details
    ChrID Protein Total
    chr1 3,640 3,640
    chr10 4,358 4,358
    chr11 3,981 3,981
    chr12 3,611 3,611
    chr13 5,245 5,245
    chr14 3,452 3,452
    chr15 3,943 3,943
    chr16 3,079 3,079
    chr17 3,868 3,868
    chr18 4,276 4,276
    chr19 3,746 3,746
    chr2 4,287 4,287
    chr20 3,685 3,685
    chr3 3,673 3,673
    chr4 3,807 3,807
    chr5 3,665 3,665
    chr6 4,007 4,007
    chr7 4,031 4,031
    chr8 5,267 5,267
    chr9 4,024 4,024
    Others 1,459 1,459
    Total 81,104 81,104