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  • Glycine max
  • SoyL06_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130395
    Accession No.
    GWHACEG00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106645, CRR106656, CRR106644, CRR106655, CRR106643,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 88.0
    Bionanol 252.3
    Hi-C 133.3
    Illumina Novaseq 6000 59.2
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEG00000000 - SoyL06_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 997,750,542
    GC content 34.98%
    Chromosomes sequence No. 20
    Genome sequence No. 37
    Maximum genome sequence length (bp) 61,561,599
    Minimum genome sequence length (bp) 20,169
    Average genome sequence length (bp) 26,966,231
    Genome sequence N50 (bp) 50,673,940
    Genome sequence N90 (bp) 42,575,228
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 82,696 82,696
    Others 62 62
    Total 82,758 82,758
    Annotation Details
    ChrID Protein Total
    chr1 3,735 3,735
    chr10 4,520 4,520
    chr11 3,937 3,937
    chr12 3,632 3,632
    chr13 5,588 5,588
    chr14 3,567 3,567
    chr15 4,066 4,066
    chr16 3,107 3,107
    chr17 3,954 3,954
    chr18 4,357 4,357
    chr19 3,657 3,657
    chr2 4,672 4,672
    chr20 3,775 3,775
    chr3 3,889 3,889
    chr4 3,959 3,959
    chr5 3,739 3,739
    chr6 4,771 4,771
    chr7 4,022 4,022
    chr8 5,566 5,566
    chr9 4,183 4,183
    Others 62 62
    Total 82,758 82,758