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  • Glycine max
  • SoyL07_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130396
    Accession No.
    GWHACEH00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106667, CRR106666, CRR106665, CRR106664, CRR106675,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 77.3
    Bionanol 200.0
    Hi-C 189.4
    Illumina Novaseq 6000 79.2
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEH00000000 - SoyL07_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,004,686,109
    GC content 35.00%
    Chromosomes sequence No. 20
    Genome sequence No. 47
    Maximum genome sequence length (bp) 61,465,525
    Minimum genome sequence length (bp) 2,000
    Average genome sequence length (bp) 21,376,300
    Genome sequence N50 (bp) 50,890,034
    Genome sequence N90 (bp) 42,635,272
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 84,028 84,028
    Others 314 314
    Total 84,342 84,342
    Annotation Details
    ChrID Protein Total
    chr1 3,773 3,773
    chr10 4,598 4,598
    chr11 3,996 3,996
    chr12 3,775 3,775
    chr13 5,460 5,460
    chr14 3,520 3,520
    chr15 4,205 4,205
    chr16 3,220 3,220
    chr17 3,954 3,954
    chr18 4,522 4,522
    chr19 3,978 3,978
    chr2 4,765 4,765
    chr20 3,901 3,901
    chr3 3,864 3,864
    chr4 4,012 4,012
    chr5 3,647 3,647
    chr6 4,817 4,817
    chr7 4,223 4,223
    chr8 5,533 5,533
    chr9 4,265 4,265
    Others 314 314
    Total 84,342 84,342