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  • Glycine max
  • SoyL08_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130397
    Accession No.
    GWHACEI00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106678, CRR106689, CRR106677, CRR106688, CRR106676,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 120.9
    Bionanol 208.0
    Hi-C 127.3
    Illumina Novaseq 6000 65.9
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEI00000000 - SoyL08_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 999,712,819
    GC content 34.96%
    Chromosomes sequence No. 20
    Genome sequence No. 60
    Maximum genome sequence length (bp) 61,660,610
    Minimum genome sequence length (bp) 3,724
    Average genome sequence length (bp) 16,661,880
    Genome sequence N50 (bp) 51,104,506
    Genome sequence N90 (bp) 42,791,047
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 86,954 86,954
    Others 370 370
    Total 87,324 87,324
    Annotation Details
    ChrID Protein Total
    chr1 3,827 3,827
    chr10 4,699 4,699
    chr11 4,265 4,265
    chr12 3,870 3,870
    chr13 5,915 5,915
    chr14 3,627 3,627
    chr15 4,235 4,235
    chr16 3,221 3,221
    chr17 4,148 4,148
    chr18 4,728 4,728
    chr19 4,063 4,063
    chr2 4,840 4,840
    chr20 4,166 4,166
    chr3 4,043 4,043
    chr4 4,124 4,124
    chr5 3,922 3,922
    chr6 4,882 4,882
    chr7 4,327 4,327
    chr8 5,700 5,700
    chr9 4,352 4,352
    Others 370 370
    Total 87,324 87,324