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  • Glycine max
  • SoyL09_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130398
    Accession No.
    GWHACEJ00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106700, CRR106699, CRR106698, CRR106697, CRR106704,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 114.3
    Bionanol 242.3
    Hi-C 140.9
    Illumina Novaseq 6000 68.1
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEJ00000000 - SoyL09_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,028,221,978
    GC content 34.95%
    Chromosomes sequence No. 20
    Genome sequence No. 79
    Maximum genome sequence length (bp) 61,504,480
    Minimum genome sequence length (bp) 20,071
    Average genome sequence length (bp) 13,015,468
    Genome sequence N50 (bp) 51,049,556
    Genome sequence N90 (bp) 41,107,028
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 86,216 86,216
    Others 1,959 1,959
    Total 88,175 88,175
    Annotation Details
    ChrID Protein Total
    chr1 3,816 3,816
    chr10 4,737 4,737
    chr11 4,274 4,274
    chr12 3,816 3,816
    chr13 5,752 5,752
    chr14 3,596 3,596
    chr15 4,249 4,249
    chr16 3,178 3,178
    chr17 4,095 4,095
    chr18 4,531 4,531
    chr19 3,978 3,978
    chr2 4,861 4,861
    chr20 4,087 4,087
    chr3 4,081 4,081
    chr4 4,105 4,105
    chr5 3,830 3,830
    chr6 4,910 4,910
    chr7 4,339 4,339
    chr8 5,685 5,685
    chr9 4,296 4,296
    Others 1,959 1,959
    Total 88,175 88,175