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  • Glycine max
  • SoyC02_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130400
    Accession No.
    GWHACEL00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106722, CRR106733, CRR106732, CRR106731, CRR106730,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 84.1
    Bionanol 306.8
    Hi-C 99.5
    Illumina Novaseq 6000 77.0
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEL00000000 - SoyC02_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,011,072,652
    GC content 35.03%
    Chromosomes sequence No. 20
    Genome sequence No. 59
    Maximum genome sequence length (bp) 60,754,092
    Minimum genome sequence length (bp) 21,777
    Average genome sequence length (bp) 17,136,825
    Genome sequence N50 (bp) 51,182,574
    Genome sequence N90 (bp) 42,598,352
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 79,813 79,813
    Others 368 368
    Total 80,181 80,181
    Annotation Details
    ChrID Protein Total
    chr1 3,572 3,572
    chr10 4,389 4,389
    chr11 3,960 3,960
    chr12 3,512 3,512
    chr13 4,674 4,674
    chr14 3,454 3,454
    chr15 4,029 4,029
    chr16 2,969 2,969
    chr17 3,894 3,894
    chr18 4,302 4,302
    chr19 3,846 3,846
    chr2 4,427 4,427
    chr20 3,698 3,698
    chr3 3,829 3,829
    chr4 3,852 3,852
    chr5 3,641 3,641
    chr6 4,523 4,523
    chr7 3,896 3,896
    chr8 5,281 5,281
    chr9 4,065 4,065
    Others 368 368
    Total 80,181 80,181