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  • Glycine max
  • SoyC03_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130401
    Accession No.
    GWHACEM00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106744, CRR106743, CRR106754, CRR106742, CRR106753,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 119.7
    Bionanol 326.1
    Hi-C 164.1
    Illumina Novaseq 6000 60.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEM00000000 - SoyC03_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,007,762,618
    GC content 34.99%
    Chromosomes sequence No. 20
    Genome sequence No. 41
    Maximum genome sequence length (bp) 59,296,855
    Minimum genome sequence length (bp) 20,176
    Average genome sequence length (bp) 24,579,576
    Genome sequence N50 (bp) 51,256,470
    Genome sequence N90 (bp) 42,975,962
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 83,785 83,785
    Others 293 293
    Total 84,078 84,078
    Annotation Details
    ChrID Protein Total
    chr1 3,782 3,782
    chr10 4,589 4,589
    chr11 4,141 4,141
    chr12 3,511 3,511
    chr13 5,557 5,557
    chr14 3,546 3,546
    chr15 4,000 4,000
    chr16 3,220 3,220
    chr17 3,964 3,964
    chr18 4,496 4,496
    chr19 3,961 3,961
    chr2 4,734 4,734
    chr20 3,938 3,938
    chr3 3,982 3,982
    chr4 4,053 4,053
    chr5 3,765 3,765
    chr6 4,549 4,549
    chr7 4,158 4,158
    chr8 5,586 5,586
    chr9 4,253 4,253
    Others 293 293
    Total 84,078 84,078