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  • Glycine max
  • SoyC05_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130403
    Accession No.
    GWHACEO00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106777, CRR106776, CRR106775, CRR106774, CRR106769,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 87.1
    Bionanol 316.6
    Hi-C 147.7
    Illumina Novaseq 6000 60.7
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEO00000000 - SoyC05_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 992,341,935
    GC content 34.93%
    Chromosomes sequence No. 20
    Genome sequence No. 33
    Maximum genome sequence length (bp) 60,546,501
    Minimum genome sequence length (bp) 1,473
    Average genome sequence length (bp) 30,070,968
    Genome sequence N50 (bp) 50,281,450
    Genome sequence N90 (bp) 42,479,091
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 84,677 84,677
    Others 282 282
    Total 84,959 84,959
    Annotation Details
    ChrID Protein Total
    chr1 3,738 3,738
    chr10 4,645 4,645
    chr11 4,283 4,283
    chr12 3,715 3,715
    chr13 5,729 5,729
    chr14 3,628 3,628
    chr15 4,166 4,166
    chr16 3,269 3,269
    chr17 4,100 4,100
    chr18 4,516 4,516
    chr19 3,970 3,970
    chr2 4,689 4,689
    chr20 3,800 3,800
    chr3 3,972 3,972
    chr4 3,988 3,988
    chr5 3,868 3,868
    chr6 4,629 4,629
    chr7 4,132 4,132
    chr8 5,543 5,543
    chr9 4,297 4,297
    Others 282 282
    Total 84,959 84,959