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  • Glycine max
  • SoyC07_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130405
    Accession No.
    GWHACEQ00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106799, CRR106810, CRR106803, CRR106802, CRR106813,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 99.6
    Bionanol 240.3
    Hi-C 155.8
    Illumina Novaseq 6000 62.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEQ00000000 - SoyC07_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,008,771,420
    GC content 35.03%
    Chromosomes sequence No. 20
    Genome sequence No. 63
    Maximum genome sequence length (bp) 61,595,759
    Minimum genome sequence length (bp) 20,043
    Average genome sequence length (bp) 16,012,245
    Genome sequence N50 (bp) 51,238,347
    Genome sequence N90 (bp) 43,125,551
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 78,114 78,114
    Others 250 250
    Total 78,364 78,364
    Annotation Details
    ChrID Protein Total
    chr1 3,589 3,589
    chr10 4,299 4,299
    chr11 3,451 3,451
    chr12 3,564 3,564
    chr13 4,808 4,808
    chr14 3,411 3,411
    chr15 3,996 3,996
    chr16 2,904 2,904
    chr17 3,915 3,915
    chr18 4,056 4,056
    chr19 3,695 3,695
    chr2 4,430 4,430
    chr20 3,371 3,371
    chr3 3,745 3,745
    chr4 3,691 3,691
    chr5 3,652 3,652
    chr6 4,354 4,354
    chr7 3,972 3,972
    chr8 5,221 5,221
    chr9 3,990 3,990
    Others 250 250
    Total 78,364 78,364