logo
Advanced

  • Glycine max
  • SoyC08_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130406
    Accession No.
    GWHACER00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106821, CRR106820, CRR106814, CRR106824, CRR106823,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 81.7
    Bionanol 399.5
    Hi-C 112.3
    Illumina Novaseq 6000 73.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACER00000000 - SoyC08_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,002,282,097
    GC content 34.98%
    Chromosomes sequence No. 20
    Genome sequence No. 40
    Maximum genome sequence length (bp) 60,187,138
    Minimum genome sequence length (bp) 10,225
    Average genome sequence length (bp) 25,057,052
    Genome sequence N50 (bp) 50,912,234
    Genome sequence N90 (bp) 42,759,090
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 77,088 77,088
    Others 223 223
    Total 77,311 77,311
    Annotation Details
    ChrID Protein Total
    chr1 3,483 3,483
    chr10 4,248 4,248
    chr11 3,902 3,902
    chr12 3,422 3,422
    chr13 5,094 5,094
    chr14 3,331 3,331
    chr15 3,860 3,860
    chr16 2,974 2,974
    chr17 3,689 3,689
    chr18 4,230 4,230
    chr19 3,720 3,720
    chr2 4,248 4,248
    chr20 3,240 3,240
    chr3 3,588 3,588
    chr4 3,729 3,729
    chr5 3,581 3,581
    chr6 4,367 4,367
    chr7 3,951 3,951
    chr8 4,745 4,745
    chr9 3,686 3,686
    Others 223 223
    Total 77,311 77,311