logo
Advanced

  • Glycine max
  • SoyC09_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130407
    Accession No.
    GWHACES00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106832, CRR106831, CRR106830, CRR106825, CRR106835,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 85.5
    Bionanol 326.5
    Hi-C 109.5
    Illumina Novaseq 6000 89.4
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACES00000000 - SoyC09_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,004,106,284
    GC content 34.93%
    Chromosomes sequence No. 20
    Genome sequence No. 67
    Maximum genome sequence length (bp) 60,422,398
    Minimum genome sequence length (bp) 7,177
    Average genome sequence length (bp) 14,986,661
    Genome sequence N50 (bp) 50,410,640
    Genome sequence N90 (bp) 42,951,446
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 83,956 83,956
    Others 319 319
    Total 84,275 84,275
    Annotation Details
    ChrID Protein Total
    chr1 3,784 3,784
    chr10 4,617 4,617
    chr11 4,059 4,059
    chr12 3,716 3,716
    chr13 5,628 5,628
    chr14 3,587 3,587
    chr15 4,191 4,191
    chr16 3,159 3,159
    chr17 4,045 4,045
    chr18 4,494 4,494
    chr19 3,855 3,855
    chr2 4,668 4,668
    chr20 3,886 3,886
    chr3 3,923 3,923
    chr4 4,025 4,025
    chr5 3,798 3,798
    chr6 4,790 4,790
    chr7 4,172 4,172
    chr8 5,420 5,420
    chr9 4,139 4,139
    Others 319 319
    Total 84,275 84,275