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  • Glycine max
  • SoyC10_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130408
    Accession No.
    GWHACET00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106843, CRR106842, CRR106841, CRR106840, CRR106836,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 81.8
    Bionanol 323.6
    Hi-C 147.5
    Illumina Novaseq 6000 63.1
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACET00000000 - SoyC10_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,004,895,999
    GC content 34.98%
    Chromosomes sequence No. 20
    Genome sequence No. 66
    Maximum genome sequence length (bp) 60,398,504
    Minimum genome sequence length (bp) 543
    Average genome sequence length (bp) 15,225,697
    Genome sequence N50 (bp) 50,999,278
    Genome sequence N90 (bp) 42,920,999
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 84,902 84,902
    Others 334 334
    Total 85,236 85,236
    Annotation Details
    ChrID Protein Total
    chr1 3,821 3,821
    chr10 4,555 4,555
    chr11 4,203 4,203
    chr12 3,703 3,703
    chr13 5,655 5,655
    chr14 3,574 3,574
    chr15 4,192 4,192
    chr16 3,233 3,233
    chr17 4,159 4,159
    chr18 4,456 4,456
    chr19 3,993 3,993
    chr2 4,729 4,729
    chr20 3,926 3,926
    chr3 3,923 3,923
    chr4 4,060 4,060
    chr5 3,887 3,887
    chr6 4,770 4,770
    chr7 4,342 4,342
    chr8 5,530 5,530
    chr9 4,191 4,191
    Others 334 334
    Total 85,236 85,236