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  • Glycine max
  • SoyC12_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130410
    Accession No.
    GWHACEV00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106861, CRR106860
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 95.9
    Bionanol 348.4
    Hi-C 143.1
    Illumina Novaseq 6000 66.7
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEV00000000 - SoyC12_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,025,105,661
    GC content 35.01%
    Chromosomes sequence No. 20
    Genome sequence No. 87
    Maximum genome sequence length (bp) 60,605,642
    Minimum genome sequence length (bp) 10,000
    Average genome sequence length (bp) 11,782,824
    Genome sequence N50 (bp) 50,775,370
    Genome sequence N90 (bp) 41,318,868
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 76,628 76,628
    Others 745 745
    Total 77,373 77,373
    Annotation Details
    ChrID Protein Total
    chr1 3,590 3,590
    chr10 4,259 4,259
    chr11 3,675 3,675
    chr12 3,446 3,446
    chr13 4,669 4,669
    chr14 3,233 3,233
    chr15 3,840 3,840
    chr16 3,010 3,010
    chr17 3,630 3,630
    chr18 4,283 4,283
    chr19 3,701 3,701
    chr2 4,315 4,315
    chr20 3,496 3,496
    chr3 3,546 3,546
    chr4 3,715 3,715
    chr5 3,668 3,668
    chr6 4,240 4,240
    chr7 3,994 3,994
    chr8 4,456 4,456
    chr9 3,862 3,862
    Others 745 745
    Total 77,373 77,373