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  • Glycine max
  • SoyC13_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130411
    Accession No.
    GWHACEW00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106865, CRR106876, CRR106864, CRR106875, CRR106863,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 126.6
    Bionanol 167.1
    Hi-C 130.6
    Illumina Novaseq 6000 61.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEW00000000 - SoyC13_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,010,090,643
    GC content 35.04%
    Chromosomes sequence No. 20
    Genome sequence No. 81
    Maximum genome sequence length (bp) 60,555,725
    Minimum genome sequence length (bp) 1,605
    Average genome sequence length (bp) 12,470,255
    Genome sequence N50 (bp) 51,080,891
    Genome sequence N90 (bp) 42,252,985
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 83,578 83,578
    Others 658 658
    Total 84,236 84,236
    Annotation Details
    ChrID Protein Total
    chr1 3,801 3,801
    chr10 4,573 4,573
    chr11 4,157 4,157
    chr12 3,634 3,634
    chr13 5,329 5,329
    chr14 3,616 3,616
    chr15 4,221 4,221
    chr16 3,240 3,240
    chr17 4,028 4,028
    chr18 4,561 4,561
    chr19 3,735 3,735
    chr2 4,583 4,583
    chr20 3,806 3,806
    chr3 3,898 3,898
    chr4 3,986 3,986
    chr5 3,689 3,689
    chr6 4,735 4,735
    chr7 4,202 4,202
    chr8 5,544 5,544
    chr9 4,240 4,240
    Others 658 658
    Total 84,236 84,236