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  • Glycine max
  • SoyC14_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130412
    Accession No.
    GWHACEX00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106887, CRR106886, CRR106885, CRR106884, CRR106879,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 90.8
    Bionanol 331.9
    Hi-C 144.9
    Illumina Novaseq 6000 94.5
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEX00000000 - SoyC14_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,007,371,887
    GC content 35.02%
    Chromosomes sequence No. 20
    Genome sequence No. 63
    Maximum genome sequence length (bp) 59,708,284
    Minimum genome sequence length (bp) 21,207
    Average genome sequence length (bp) 15,990,030
    Genome sequence N50 (bp) 51,618,763
    Genome sequence N90 (bp) 42,307,678
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 78,648 78,648
    Others 477 477
    Total 79,125 79,125
    Annotation Details
    ChrID Protein Total
    chr1 3,736 3,736
    chr10 4,399 4,399
    chr11 3,670 3,670
    chr12 3,405 3,405
    chr13 5,190 5,190
    chr14 3,393 3,393
    chr15 3,920 3,920
    chr16 2,999 2,999
    chr17 3,858 3,858
    chr18 4,220 4,220
    chr19 3,670 3,670
    chr2 4,340 4,340
    chr20 3,726 3,726
    chr3 3,575 3,575
    chr4 3,845 3,845
    chr5 3,563 3,563
    chr6 4,354 4,354
    chr7 3,785 3,785
    chr8 5,015 5,015
    chr9 3,985 3,985
    Others 477 477
    Total 79,125 79,125