- Scientific Name
- Trachidermus fasciatus
- Common Names
- roughskin sculpin;
- Bioproject
- PRJCA002534
- Biosample
- SAMC159315
- Accession No.
- GWHACFF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Medical School, Nantong University
- Contact
- Gangcai Xie, gcxiester@gmail.com
- Sequence author(s)
- Gangcai Xie, Dong Liu
- Released Date
- 2020-04-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Nextdenovo 2019-01-01
- Sequencing & coverage
- Nanopore sequencing 160.0
- Download
- DNA
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHACFF00000000 | - | Tfa1 | Draft genome in chromosome level | 2020-04-15 |
DNA
|
| GWHACFF00000000.1 | - | Tfa1 | Draft genome in chromosome level | 2020-06-04 |
DNA
GFF
RNA
CDS
Protein
|
| GWHACFF00000000.2 | - | Trf1 | Draft genome in chromosome level | 2020-12-21 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 542,656,829 |
| GC content | 42.60% |
| Chromosomes sequence No. | 20 |
| Genome sequence No. | 44 |
| Maximum genome sequence length (bp) | 48,280,228 |
| Minimum genome sequence length (bp) | 78,951 |
| Average genome sequence length (bp) | 12,333,110 |
| Genome sequence N50 (bp) | 24,935,520 |
| Genome sequence N90 (bp) | 20,550,679 |