Genome Warehouse

Scientific Name: Trachidermus fasciatus
Common Names: roughskin sculpin;
Bioproject: PRJCA002534
Biosample: SAMC159315
Accession No.: GWHACFF00000000.1
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: Medical School, Nantong University
Contact: Gangcai Xie, gcxiester@gmail.com
Sequence author(s): Gangcai Xie, Dong Liu
Released Date: 2020-06-04
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: NextDenovo 2019-01-01
Sequencing & coverage: Nanopore 160.0
Download: DNA GFF RNA CDS Protein
Publication(s): -

History

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACFF00000000	-	Tfa1	Draft genome in chromosome level	2020-04-15	DNA
GWHACFF00000000.1	-	Tfa1	Draft genome in chromosome level	2020-06-04	DNA GFF RNA CDS Protein
GWHACFF00000000.2	-	Trf1	Draft genome in chromosome level	2020-12-21	DNA GFF RNA CDS Protein

GWH

Statistics of Genome Assembly

Genome size (bp)	542,656,829
GC content	42.60%
Chromosomes sequence No.	20
Genome sequence No.	44
Maximum genome sequence length (bp)	48,280,228
Minimum genome sequence length (bp)	78,951
Average genome sequence length (bp)	12,333,110
Genome sequence N50 (bp)	24,935,520
Genome sequence N90 (bp)	20,550,679

Annotation of Whole Genome Assembly

	Protein	Total
Chromosome	22,953	22,953
Others	238	238
Total	23,191	23,191

Annotation Details

ChrID	Protein	Total
chr1	1,968	1,968
chr10	881	881
chr11	1,131	1,131
chr12	1,117	1,117
chr13	970	970
chr14	857	857
chr15	1,021	1,021
chr16	1,057	1,057
chr17	901	901
chr18	1,179	1,179
chr19	676	676
chr2	1,878	1,878
chr20	775	775
chr3	1,662	1,662
chr4	1,619	1,619
chr5	908	908
chr6	1,192	1,192
chr7	1,150	1,150
chr8	1,053	1,053
chr9	958	958
Others	238	238
Total	23,191	23,191