- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817693
- Accession No.
- GWHBJVG00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- horticulture, China Agricultural University
- Contact
- Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Haochen Sun, Shiyao Wang, Yuqi Li, Zijun Wang
- Released Date
- 2023-11-11
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r327
- Sequencing & coverage
- PacBio 104.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVG00000000 | - | MM106 unphased genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVG00000000.1 | - | MM106 haploid consensus genome | Draft genome in chromosome level | 2023-11-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVG00000000.2 | - | MM106 haploid consensus genome | Draft genome in chromosome level | 2023-12-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 704,846,311 |
| GC content | 38.41% |
| Genome sequence No. | 1,193 |
| Maximum genome sequence length (bp) | 55,895,690 |
| Minimum genome sequence length (bp) | 9,804 |
| Average genome sequence length (bp) | 590,818 |
| Genome sequence N50 (bp) | 38,872,429 |
| Genome sequence N90 (bp) | 30,688,119 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 50,227 | 50,227 |