- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817693
- Accession No.
- GWHBJVG00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-11-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r327
- Sequencing & coverage
- PacBio 103.8
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVG00000000 | - | MM106 unphased genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVG00000000.1 | - | MM106 haploid consensus genome | Draft genome in chromosome level | 2023-11-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVG00000000.2 | - | MM106 haploid consensus genome | Draft genome in chromosome level | 2023-12-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 704,734,475 |
| GC content | 38.41% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 1,190 |
| Maximum genome sequence length (bp) | 55,895,690 |
| Minimum genome sequence length (bp) | 9,804 |
| Average genome sequence length (bp) | 592,214 |
| Genome sequence N50 (bp) | 38,872,429 |
| Genome sequence N90 (bp) | 30,688,119 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,859 | 34,859 |
| Others | 14,169 | 14,169 |
| Total | 49,028 | 49,028 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,323 | 2,323 |
| chr10 | 3,404 | 3,404 |
| chr11 | 3,150 | 3,150 |
| chr12 | 2,661 | 2,661 |
| chr14 | 2,392 | 2,392 |
| chr15 | 4,250 | 4,250 |
| chr16 | 2,865 | 2,865 |
| chr17 | 2,792 | 2,792 |
| chr2 | 2,947 | 2,947 |
| chr6 | 2,441 | 2,441 |
| chr7 | 2,968 | 2,968 |
| chr9 | 2,666 | 2,666 |
| Others | 14,169 | 14,169 |
| Total | 49,028 | 49,028 |