- Scientific Name
- Corchorus olitorius
- Common Names
- Nalta jute;
- Bioproject
- PRJCA007347
- Biosample
- SAMC515474
- Accession No.
- GWHBQTL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- germplasm research department, Institute of Bast Fiber Crops, Chinese Academy of Agricultural Science
- Contact
- Zemao Yang, yangzemao@caas.cn
- Sequence author(s)
- Zemao Yang
- Released Date
- 2023-01-07
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler wtdbg2
- Sequencing & coverage
- Nanopore 97.53
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Zemao Yang. Multi-omics provides new insights into the domestication and improvement of dark jute (Corchorus olitorius). The Plant Journal. 2022, 112: 812–829.
Statistics of Genome Assembly
| Genome size (bp) | 411,301,838 |
| GC content | 35.38% |
| Genome sequence No. | 439 |
| Maximum genome sequence length (bp) | 66,647,460 |
| Minimum genome sequence length (bp) | 9,229 |
| Average genome sequence length (bp) | 936,906 |
| Genome sequence N50 (bp) | 55,791,781 |
| Genome sequence N90 (bp) | 47,449,962 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 31,434 | 31,434 |