- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJCA018610
- Biosample
- SAMC2963014
- Accession No.
- GWHDRIN00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Plant Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Lianguang Shang, shanglianguang@163.com
- Sequence author(s)
- Lianguang Shang
- Released Date
- 2023-08-08
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.3-r572
- Sequencing & coverage
- PacBio Sequel II 85.0
NANOPORE GridION 220.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 385,710,679 |
| GC content | 43.72% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 67,818 | 67,818 |
| Total | 67,818 | 67,818 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 8,080 | 8,080 |
| chr10 | 4,142 | 4,142 |
| chr11 | 4,768 | 4,768 |
| chr12 | 4,678 | 4,678 |
| chr2 | 6,689 | 6,689 |
| chr3 | 7,103 | 7,103 |
| chr4 | 6,241 | 6,241 |
| chr5 | 5,519 | 5,519 |
| chr6 | 5,499 | 5,499 |
| chr7 | 5,232 | 5,232 |
| chr8 | 4,899 | 4,899 |
| chr9 | 4,968 | 4,968 |
| Total | 67,818 | 67,818 |