Genome Warehouse

Scientific Name: Malus domestica
Common Names: apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
Bioproject: PRJCA010465
Biosample: SAMC817693
Accession No.: GWHBJVI00000000.1
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 80,507,572 (SNP), 11,854,944 (Indel)
Submitter Organization: Horticulture, China Agricultural University
Contact: Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
Sequence author(s): Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
Released Date: 2023-11-28
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm v0.15_r334
Sequencing & coverage: PacBio 103.8
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): -

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHBJVI00000000	-	MM106 phased haploid A genome	Draft genome in chromosome level	2023-11-11	DNA GFF RNA CDS Protein
GWHBJVI00000000.1	-	MM106 haplome A genome	Draft genome in chromosome level	2023-11-28	DNA GFF RNA CDS Protein
GWHBJVI00000000.2	-	MM106 haplome A genome	Draft genome in chromosome level	2023-12-12	DNA GFF RNA CDS Protein

Genome size (bp)	688,888,040
GC content	38.38%
Chromosomes sequence No.	5
Genome sequence No.	153
Maximum genome sequence length (bp)	55,065,909
Minimum genome sequence length (bp)	22,389
Average genome sequence length (bp)	4,502,536
Genome sequence N50 (bp)	38,161,495
Genome sequence N90 (bp)	30,413,969

Annotation of Whole Genome Assembly

Annotation Details